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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4121739_4121893_F

Intron Information:

Intron Rank:
13
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
4121739 - 4121893
Intron Length:
155

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTACCGACA
5'SS Class:
weak_major
3'SS Sequence:
TCTCCCCTCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGAGCAG
U12 Branch Point Sequence:
GTGTCGGTGAGC
Flanking Amino Acid:
AAQPAPRPMLRFYLIAGGIP
Intron Amino Acid Position:
715

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58.3
0.2
1.3
54.7
44.1
Major BPS
39.8
-0.6
1.7
45.5
47.5
Major PPT
78.5
0.64
0.7
72.8
25.3
Minor 5ss
37.5
-1.4
3.3
49.5
46.6
Minor BPS
39.8
-0.8
2.7
53.74
44.7

Associated Gene:

Gene:
ADGRA2
Ensembl Gene ID:
ENSAPLG00000008397
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008730
4117884 - 4123420
5537