About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4127609_4127948_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4127609 - 4127948
Intron Length:
340

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGTG
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTCTCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
CTGATTGTAAAA
Flanking Amino Acid:
KEQLSRCMQRGIRRVQDLCK
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
78.9
35.3
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
81.7
0.71
0.8
76.8
31.8
Minor 5ss
34
-1.8
3.5
46.6
48.7
Minor BPS
43.6
-0.4
2
51.99
40.4

Associated Gene:

Gene:
BRF2
Ensembl Gene ID:
ENSAPLG00000020942
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030298
4124797 - 4128959
4163