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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_412887_415465_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
412887 - 415465
Intron Length:
2579

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTATTA
5'SS Class:
major
3'SS Sequence:
GTTTTCTTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
GTTTTCTTAACA
Flanking Amino Acid:
PAAAFCSPLARQLFRIEGVK
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
72.3
33
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
81.5
0.71
0.9
77.5
35.6
Minor 5ss
47.7
-0.2
2.8
65.1
46
Minor BPS
85.7
1.12
0.9
87.92
29.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001741
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041079
406496 - 422137
15642
ENSAPLT00000031568
406639 - 422137
15499
ENSAPLT00000001963
407398 - 422137
14740