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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4135379_4139371_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4135379 - 4139371
Intron Length:
3993

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTCGT
5'SS Class:
major
3'SS Sequence:
TTTAATGTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
GCCTTTTTAATG
Flanking Amino Acid:
AAAKTKAVKPRLHPVKPMNA
Intron Amino Acid Position:
525

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1.3
72.7
44.5
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
79.4
0.66
1
72.5
42
Minor 5ss
31.4
-2.1
2.9
42.4
44.2
Minor BPS
59
0.14
1.4
54.54
41.8

Associated Gene:

Gene:
RAB11FIP1
Ensembl Gene ID:
ENSAPLG00000008753
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009105
4133216 - 4144395
11180