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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4140174_4140605_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4140174 - 4140605
Intron Length:
432

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAA
U12 Branch Point Sequence:
AGATCTTGAATT
Flanking Amino Acid:
DESETSPTSERAFGNALEEK
Intron Amino Acid Position:
258

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
80.7
33.7
Major BPS
74.6
0.61
1
65.6
41.4
Major PPT
91.7
0.94
0.7
84.6
36
Minor 5ss
35.6
-1.6
2.8
42.7
38.3
Minor BPS
62.7
0.48
1.4
73.15
37.5

Associated Gene:

Gene:
RAB11FIP1
Ensembl Gene ID:
ENSAPLG00000008753
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035214
4134376 - 4144395
10020
ENSAPLT00000020385
4133216 - 4144395
11180
ENSAPLT00000009105
4133216 - 4144395
11180
ENSAPLT00000047466
4135365 - 4144395
9031