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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4141055_4144072_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4141055 - 4144072
Intron Length:
3018

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGGGCC
5'SS Class:
major
3'SS Sequence:
CTTGGTTTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACAAAT
U12 Branch Point Sequence:
TGTTGCTGAAAC
Flanking Amino Acid:
LRGDGGRRHTRWYKLRSKPG
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
65.5
34.2
Major BPS
60.7
0.27
1
65.3
28.1
Major PPT
72.6
0.51
1.1
68.6
42
Minor 5ss
23.6
-3
3.5
32.2
42.8
Minor BPS
53.9
0.1
2
69.75
41

Associated Gene:

Gene:
RAB11FIP1
Ensembl Gene ID:
ENSAPLG00000008753
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020385
4133216 - 4144395
11180
ENSAPLT00000009105
4133216 - 4144395
11180
ENSAPLT00000047466
4135365 - 4144395
9031
ENSAPLT00000035214
4134376 - 4144395
10020