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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_41641_42496_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
41641 - 42496
Intron Length:
856

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCGGCAC
5'SS Class:
major
3'SS Sequence:
CTCTCTTGTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TATCCCTTATTT
Flanking Amino Acid:
RVFERSVYSDRVHFADMRHM
Intron Amino Acid Position:
48

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1
60.2
40.6
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
79.7
0.67
0.9
75
33.4
Minor 5ss
24.5
-2.9
3.2
32
42.8
Minor BPS
68.9
0.67
1.6
82.93
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006237
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006455
41095 - 42828
1734