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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4173779_4175031_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4173779 - 4175031
Intron Length:
1253

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TCCTTCTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GACTCAT
U12 Branch Point Sequence:
TCCTTCTCCACA
Flanking Amino Acid:
VQNDDEKPSVGEEEQFDMDI
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
70.2
35.9
Major BPS
69.4
0.48
1.2
71.6
36.4
Major PPT
80.7
0.69
0.7
75.6
26.6
Minor 5ss
26.7
-2.7
3
27.9
37.8
Minor BPS
49.2
-0
2
62.43
44.3

Associated Gene:

Gene:
EIF4EBP1
Ensembl Gene ID:
ENSAPLG00000015855
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016526
4172478 - 4175063
2586