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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4180531_4180572_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
4180531 - 4180572
Intron Length:
42

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GCG|GCACCGCAG
5'SS Class:
weak_major
3'SS Sequence:
GGATCAAGGTGAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AAAGGAT
U12 Branch Point Sequence:
ACCGCAGGAACA
Flanking Amino Acid:
DGGPRGSGSRRDAPGPGEDA
Intron Amino Acid Position:
238

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
55.9
0.14
1.4
41.5
45.3
Major BPS
47.3
-0.1
1.3
43.5
39.2
Major PPT
40.5
-0.5
1.7
36.8
44
Minor 5ss
24.7
-2.9
4.2
37.9
47
Minor BPS
39.4
-0.8
2.2
47.28
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023258
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036949
4180073 - 4182526
2454