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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4185235_4185472_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4185235 - 4185472
Intron Length:
238

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTACGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTGTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTGAT
U12 Branch Point Sequence:
TGTGGCTTACAC
Flanking Amino Acid:
TWPNNIVKTMCKERDVFLVK
Intron Amino Acid Position:
208

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
79.9
34.9
Major BPS
68.9
0.47
1.2
60.7
45.9
Major PPT
85.8
0.81
0.8
84.1
30.9
Minor 5ss
36.5
-1.5
3
47.5
43.4
Minor BPS
46
-0.3
2.2
60
45

Associated Gene:

Gene:
ASH2L
Ensembl Gene ID:
ENSAPLG00000015588
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048141
4182805 - 4191869
9065
ENSAPLT00000016272
4182805 - 4191285
8481