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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4185784_4186458_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4185784 - 4186458
Intron Length:
675

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
ACG|GCAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
AGTTTCTCAAAT
Flanking Amino Acid:
NAVSTSGSLNGGASLGGGIA
Intron Amino Acid Position:
265

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1.2
77.8
38.7
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
85.8
0.81
0.8
79.9
32.3
Minor 5ss
33
-1.9
4
51.5
44.9
Minor BPS
61
0.42
1.6
76.88
39

Associated Gene:

Gene:
ASH2L
Ensembl Gene ID:
ENSAPLG00000015588
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016272
4182805 - 4191285
8481