About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4192685_4192774_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4192685 - 4192774
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTCC
5'SS Class:
strong_major
3'SS Sequence:
TGCTCCTCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTAAC
U12 Branch Point Sequence:
GTCCCACTAACA
Flanking Amino Acid:
LIWLLSIDLKGWLPKTIINQ
Intron Amino Acid Position:
249

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.9
75.8
35
Major BPS
64.5
0.36
1
65.2
28.2
Major PPT
69.9
0.45
0.8
62.1
34.8
Minor 5ss
45.1
-0.5
2.8
60
44.7
Minor BPS
49.2
-0
2
64.11
41.4

Associated Gene:

Gene:
STAR
Ensembl Gene ID:
ENSAPLG00000015079
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015717
4192577 - 4194899
2323