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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4192869_4193082_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4192869 - 4193082
Intron Length:
214

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACCGCC
5'SS Class:
major
3'SS Sequence:
ACTGCCCTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TGGTTTTTAACA
Flanking Amino Acid:
GAMPEQQGFVRAENGPTCMI
Intron Amino Acid Position:
217

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.2
65.5
42
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
69.8
0.45
0.9
62.7
33.8
Minor 5ss
43.1
-0.8
3.2
60
44.7
Minor BPS
73.6
0.74
1.2
75.27
36.4

Associated Gene:

Gene:
STAR
Ensembl Gene ID:
ENSAPLG00000015079
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015717
4192577 - 4194899
2323