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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4193966_4194231_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4193966 - 4194231
Intron Length:
266

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTGTC
5'SS Class:
major
3'SS Sequence:
CGCCGCCTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TGGCTTTTGTCC
Flanking Amino Acid:
NQVRRRSSLLSSRLEEKPFS
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
73.7
35.7
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
64
0.32
0.9
53.2
36.7
Minor 5ss
39.4
-1.2
3.3
58.2
40.5
Minor BPS
39.2
-0.8
3.3
54.69
37.9

Associated Gene:

Gene:
STAR
Ensembl Gene ID:
ENSAPLG00000015079
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015717
4192577 - 4194899
2323