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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4194346_4194835_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4194346 - 4194835
Intron Length:
490

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGGGCA
5'SS Class:
major
3'SS Sequence:
CTCTCTGCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAGTGAT
U12 Branch Point Sequence:
GGCTCAGTGATG
Flanking Amino Acid:
ISYRHLRNMTGLRRQAAVAI
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
63.1
37.1
Major BPS
61.1
0.28
1.2
52.7
43.2
Major PPT
72.9
0.52
0.9
64.7
36.5
Minor 5ss
24.5
-2.9
3.3
30.5
42.8
Minor BPS
41.8
-0.7
2.2
44.84
41.5

Associated Gene:

Gene:
STAR
Ensembl Gene ID:
ENSAPLG00000015079
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015717
4192577 - 4194899
2323