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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4199274_4199338_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
4199274 - 4199338
Intron Length:
65

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTGCG
5'SS Class:
strong_major
3'SS Sequence:
CGGTGGCGCGCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GGCTGAC
U12 Branch Point Sequence:
GGGGGCTGACGG
Flanking Amino Acid:
ILEKVNSRFVVSLAYAYETK
Intron Amino Acid Position:
408

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
67.6
37.6
Major BPS
49.4
-0
1.3
42.8
41.8
Major PPT
53.7
0.08
1.1
45.8
41.4
Minor 5ss
27.7
-2.6
3
29.4
36.9
Minor BPS
32.7
-1.4
2.1
29
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026406
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043875
4196539 - 4202201
5663