Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4200191_4200422_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4200191 - 4200422

Intron Length:

232

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCG|GTAAGGGGC

5'SS Class:

major

3'SS Sequence:

CCCTCCTCCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCCCAT

U12 Branch Point Sequence:

CCATCCCCAACG

Flanking Amino Acid:

LRCIRFLDAAADYELAPDEK

Intron Amino Acid Position:

249

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.7

0.68

64.8

41.3

Major BPS

57.1

0.18

1.4

66.4

42.2

Major PPT

73.2

0.52

0.8

64.5

30.9

Minor 5ss

30.1

-2.3

3.5

41.6

45.3

Minor BPS

47.9

-0.3

53.28

46.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000026406

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043875

4196539 - 4202201

5663

ENSAPLT00000043391

4197539 - 4202201

4663