About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4219232_4219623_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4219232 - 4219623
Intron Length:
392

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
TCCTTGTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATGAC
U12 Branch Point Sequence:
TGCAGCTTAATG
Flanking Amino Acid:
REIIILHNPKLMVHYHPVAT
Intron Amino Acid Position:
158

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.8
37
Major BPS
67
0.42
1.1
57.7
39
Major PPT
84.6
0.78
0.8
78.8
33.2
Minor 5ss
26.2
-2.7
2.9
30.9
42.7
Minor BPS
51.7
-0
1.9
56.54
45.1

Associated Gene:

Gene:
DDHD2
Ensembl Gene ID:
ENSAPLG00000014268
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014883
4217383 - 4224744
7362