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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4223184_4223330_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4223184 - 4223330
Intron Length:
147

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGAGCT
5'SS Class:
strong_major
3'SS Sequence:
GCTCTATTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
GCTCTATTCACA
Flanking Amino Acid:
APEEDEQSREGSRTASSNTG
Intron Amino Acid Position:
367

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
72.5
37.3
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
74.9
0.56
0.9
68.2
36.5
Minor 5ss
31.7
-2.1
3.6
47.8
47.9
Minor BPS
46.6
-0.2
2
58.24
41.1

Associated Gene:

Gene:
DDHD2
Ensembl Gene ID:
ENSAPLG00000014268
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014883
4217383 - 4224744
7362