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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4223704_4224148_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4223704 - 4224148
Intron Length:
445

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTCTC
5'SS Class:
strong_major
3'SS Sequence:
TGTGTTGCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCAGGAT
U12 Branch Point Sequence:
TGCCCCTGCAGG
Flanking Amino Acid:
NYISSKKERQGASERGAAAP
Intron Amino Acid Position:
439

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
77.9
36.9
Major BPS
41.9
-0.5
1.5
33.4
42.7
Major PPT
76
0.59
1
69.6
41.6
Minor 5ss
44.9
-0.6
2.8
61.5
43.4
Minor BPS
42
-0.7
2.2
46.32
45.9

Associated Gene:

Gene:
DDHD2
Ensembl Gene ID:
ENSAPLG00000014268
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014883
4217383 - 4224744
7362