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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4224511_4224587_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4224511 - 4224587
Intron Length:
77

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAGGTATA
5'SS Class:
major
3'SS Sequence:
CTCCTCCGCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTCAC
U12 Branch Point Sequence:
GCCTCGCTCACT
Flanking Amino Acid:
CKGFFNIFHPFDPVAYRIEP
Intron Amino Acid Position:
527

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.9
0.42
1.2
71.3
40.3
Major BPS
57.5
0.19
1.1
60.7
37.6
Major PPT
69.5
0.44
0.9
63.9
31.3
Minor 5ss
40.8
-1
3.2
60.3
44.3
Minor BPS
42
-0.5
2.6
60.77
48.5

Associated Gene:

Gene:
DDHD2
Ensembl Gene ID:
ENSAPLG00000014268
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014883
4217383 - 4224744
7362