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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_42331_42496_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
42331 - 42496
Intron Length:
166

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTTGTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TATCCCTTATTT
Flanking Amino Acid:
HEHWLLERRTKVHFADMRHM
Intron Amino Acid Position:
213

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
0.9
74.2
36.1
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
79.7
0.67
0.9
75
33.4
Minor 5ss
33.1
-1.9
3
43
37.7
Minor BPS
68.9
0.67
1.6
82.93
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006237
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040511
40973 - 42677
1705