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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4240729_4241081_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4240729 - 4241081
Intron Length:
353

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTGGA
5'SS Class:
strong_major
3'SS Sequence:
TTGTAATTGCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TCTTTTGTAATT
Flanking Amino Acid:
CSGFLGVRPKTAFATANEEK
Intron Amino Acid Position:
338

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
72.6
39.1
Major BPS
78.6
0.71
1
78.6
31
Major PPT
65.4
0.35
1.1
59.2
46
Minor 5ss
31
-2.2
3.3
40.9
45.3
Minor BPS
58.8
0.35
2
78.3
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013728
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014336
4239415 - 4245288
5874