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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4243953_4244409_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4243953 - 4244409
Intron Length:
457

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATCA
5'SS Class:
strong_major
3'SS Sequence:
CTCCCTTGCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
CTATTTTCAACT
Flanking Amino Acid:
QTSINKTFKKALEEAAKRFQ
Intron Amino Acid Position:
99

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
73.8
30.8
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
71.7
0.49
0.9
66.9
32.8
Minor 5ss
37.6
-1.4
3.1
48.6
47.1
Minor BPS
62.7
0.48
1.5
76.31
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013728
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014336
4239415 - 4245288
5874