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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4244613_4245196_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4244613 - 4245196
Intron Length:
584

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGTTCG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTACAT
U12 Branch Point Sequence:
GCTCACAGAACT
Flanking Amino Acid:
QIVWVKLGNYRWWPAEICNP
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.4
1.12
0.8
77.8
38.7
Major BPS
70.4
0.51
1.1
78.7
33.6
Major PPT
85.6
0.8
0.8
77.2
37.1
Minor 5ss
30.2
-2.3
3.8
41.3
45.2
Minor BPS
46.6
-0.1
1.9
65.85
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013728
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014336
4239415 - 4245288
5874