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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_42597_42765_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42597 - 42765
Intron Length:
169

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTGGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
CTCTTTTCACCT
Flanking Amino Acid:
AAMQDILMAQVESFVKSLQN
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
70.2
35.9
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
100
1.12
0.4
100
0
Minor 5ss
32.7
-2
3.1
40.4
45.8
Minor BPS
48.7
-0
1.8
66.64
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006237
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006455
41095 - 42828
1734