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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4261703_4262132_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4261703 - 4262132
Intron Length:
430

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGGAG
5'SS Class:
strong_major
3'SS Sequence:
TTCTCAATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
AATTTCTCAATT
Flanking Amino Acid:
LDVHTKINTRGAREYHVQFF
Intron Amino Acid Position:
306

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73
38.2
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
81.4
0.71
0.8
78.4
33.6
Minor 5ss
28.6
-2.5
3.5
36.8
47.7
Minor BPS
67.2
0.62
1.5
79.68
36.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019197
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034817
4259264 - 4266470
7207
ENSAPLT00000047112
4259264 - 4266470
7207