Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4262293_4262789_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4262293 - 4262789

Intron Length:

497

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCG|GTTAGTACA

5'SS Class:

major

3'SS Sequence:

TTGTTCTTTGTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGCTAAG

U12 Branch Point Sequence:

GGCTGCTAAGCT

Flanking Amino Acid:

REDALLEEAPVQQFLPSLPT

Intron Amino Acid Position:

253

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.5

0.6

1.2

73.1

37.6

Major BPS

55.4

0.13

1.6

63.6

42.5

Major PPT

85.1

0.79

0.7

81.4

30.6

Minor 5ss

32.9

-2

2.4

37.7

39.2

Minor BPS

44.3

-0.3

2.2

61.14

48.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019197

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034817

4259264 - 4266470

7207