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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4262859_4265653_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
4262859 - 4265653
Intron Length:
2795

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
ACCCATGTCCTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TCATTCTTACCC
Flanking Amino Acid:
IPKLEPEEQNRPNERLSMLA
Intron Amino Acid Position:
230

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
1
74.4
36.1
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
59.1
0.2
0.9
49.7
38.4
Minor 5ss
34.5
-1.8
3.3
44.7
43.5
Minor BPS
64.2
0.43
1.6
70.36
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019197
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034817
4259264 - 4266470
7207