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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4277025_4277107_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4277025 - 4277107
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGGAC
5'SS Class:
major
3'SS Sequence:
CCGTCCCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTGAG
U12 Branch Point Sequence:
CCCGCCTGAGCC
Flanking Amino Acid:
DRIVAMTSNQEYLDLSVPLD
Intron Amino Acid Position:
756

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
67.4
38.4
Major BPS
44.9
-0.3
1.6
39
42.9
Major PPT
75.8
0.58
0.8
69
31.5
Minor 5ss
28.1
-2.5
3.7
39.6
46.7
Minor BPS
46
-0.3
1.8
50.45
46.3

Associated Gene:

Gene:
FGFR1
Ensembl Gene ID:
ENSAPLG00000014095
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014705
4276848 - 4293704
16857