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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4279933_4281134_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
4279933 - 4281134
Intron Length:
1202

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATATACT
5'SS Class:
strong_major
3'SS Sequence:
CGTGCCGACCCAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGCTAAT
U12 Branch Point Sequence:
CTCCTGCTAATG
Flanking Amino Acid:
HHSAWLTVLEAIEDTPAMMT
Intron Amino Acid Position:
359

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
0.9
79.5
33.5
Major BPS
79.3
0.73
1.1
77.9
34.9
Major PPT
56.9
0.16
1
46.6
40.6
Minor 5ss
43.8
-0.7
2.7
60.9
43.5
Minor BPS
40.5
-0.8
2.2
44.25
42.4

Associated Gene:

Gene:
FGFR1
Ensembl Gene ID:
ENSAPLG00000014095
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014705
4276848 - 4293704
16857