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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4281280_4282591_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4281280 - 4282591
Intron Length:
1312

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGCCG
5'SS Class:
major
3'SS Sequence:
TTTTTCCTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTCCAT
U12 Branch Point Sequence:
TTTGCTTCCATT
Flanking Amino Acid:
DNLPYVQILKTAGVNTTDKE
Intron Amino Acid Position:
311

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
60.3
44.2
Major BPS
65
0.37
1.3
76.1
38
Major PPT
88.6
0.87
0.6
82
30
Minor 5ss
30.4
-2.2
3.3
39.3
46.1
Minor BPS
49.5
0.04
2
75.4
42.3

Associated Gene:

Gene:
FGFR1
Ensembl Gene ID:
ENSAPLG00000014095
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014705
4276848 - 4293704
16857