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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4284990_4285376_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
4284990 - 4285376
Intron Length:
387

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACC|GTATGTCTG
5'SS Class:
weak_major
3'SS Sequence:
TCTGGCTCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTGAG
U12 Branch Point Sequence:
CCGCGCTGAGCC
Flanking Amino Acid:
EKEADNTKPNQAVAPYWTYP
Intron Amino Acid Position:
147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.6
0.25
1.4
56.6
47.7
Major BPS
46
-0.2
1.6
40.4
42.3
Major PPT
71.2
0.48
0.9
61.7
40
Minor 5ss
45.8
-0.4
2.8
63
41.7
Minor BPS
40.8
-0.7
2
44.23
43.7

Associated Gene:

Gene:
FGFR1
Ensembl Gene ID:
ENSAPLG00000014095
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014705
4276848 - 4293704
16857