Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4285461_4286313_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4285461 - 4286313

Intron Length:

853

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTTCGTAGC

5'SS Class:

major

3'SS Sequence:

TCTTCTCTTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CGCTCAG

U12 Branch Point Sequence:

GCACGCTCAGCC

Flanking Amino Acid:

ETTYFSVNVSDALPSAEDDD

Intron Amino Acid Position:

119

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.8

0.56

1.2

68.4

42.6

Major BPS

47.4

-0.1

1.6

54.7

43.1

Major PPT

89.3

0.88

0.6

84.5

23.3

Minor 5ss

31.4

-2.1

2.7

38.1

39.4

Minor BPS

40.9

-0.7

46.02

42.2

Associated Gene:

Gene:

FGFR1

Ensembl Gene ID:

ENSAPLG00000014095

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014705

4276848 - 4293704

16857