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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_432627_435242_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
432627 - 435242
Intron Length:
2616

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGACATCT
5'SS Class:
major
3'SS Sequence:
TTTCCCCATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
TTTATTGTAAAT
Flanking Amino Acid:
GLQERRELPGGIFAYLNYHV
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1.1
71.2
35.2
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
79.5
0.66
0.8
73.6
30.4
Minor 5ss
40.7
-1
3.1
57.4
46.8
Minor BPS
51
0.11
2.1
77.18
39.4

Associated Gene:

Gene:
GFPT1
Ensembl Gene ID:
ENSAPLG00000000806
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001166
432527 - 457207
24681