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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4348756_4349139_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4348756 - 4349139
Intron Length:
384

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGGG
5'SS Class:
strong_major
3'SS Sequence:
CTTGATCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTGAT
U12 Branch Point Sequence:
TCCTGCTTAACC
Flanking Amino Acid:
QALVLDVCAQDEGALISEIP
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
1
67.1
44.6
Major BPS
71.5
0.53
1.1
63
43.2
Major PPT
72.5
0.51
0.9
65.8
35.6
Minor 5ss
30.7
-2.2
3.4
40.1
46
Minor BPS
67.9
0.54
1.8
73.91
43.5

Associated Gene:

Gene:
TACC1
Ensembl Gene ID:
ENSAPLG00000014634
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041014
4337862 - 4354846
16985
ENSAPLT00000032069
4337862 - 4354846
16985
ENSAPLT00000015259
4337862 - 4354846
16985