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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4349339_4351119_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4349339 - 4351119
Intron Length:
1781

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGAGC
5'SS Class:
major
3'SS Sequence:
TCCCTGTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTGAA
U12 Branch Point Sequence:
AAATGTTGAATT
Flanking Amino Acid:
VPAAKHGVEAGFEKELSKQM
Intron Amino Acid Position:
140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
69
38.8
Major BPS
72
0.55
1.1
63.4
44.3
Major PPT
78
0.63
0.8
76.1
32.5
Minor 5ss
31.2
-2.1
3.4
42.5
44.6
Minor BPS
49
0.01
1.8
65.27
39.4

Associated Gene:

Gene:
TACC1
Ensembl Gene ID:
ENSAPLG00000014634
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041014
4337862 - 4354846
16985