About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4349373_4352576_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
4349373 - 4352576
Intron Length:
3204

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCCAT
5'SS Class:
strong_major
3'SS Sequence:
TGGGCATCACCAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GACAAAT
U12 Branch Point Sequence:
TGGGCATCACCA
Flanking Amino Acid:
RERPCCLWLWSGSKSDSPLD
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
74
38.4
Major BPS
51.7
0.04
1.2
59.2
35.9
Major PPT
58.1
0.18
1.1
48.7
44
Minor 5ss
34.1
-1.8
3.2
46.7
48.6
Minor BPS
42.8
-0.5
2.1
53.45
44.6

Associated Gene:

Gene:
TACC1
Ensembl Gene ID:
ENSAPLG00000014634
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015259
4337862 - 4354846
16985