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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4352662_4352777_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4352662 - 4352777
Intron Length:
116

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGCCG
5'SS Class:
strong_major
3'SS Sequence:
TGCTGCCTCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGAGCAC
U12 Branch Point Sequence:
ACGGCCCCAGGG
Flanking Amino Acid:
AAVLTLIREEIITKEIEANE
Intron Amino Acid Position:
165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
63.1
43
Major BPS
38.3
-0.7
1.4
37.2
42.1
Major PPT
71.3
0.48
0.9
61.6
40
Minor 5ss
25.6
-2.8
3
30.2
43
Minor BPS
32.9
-1.4
2
30.22
41.3

Associated Gene:

Gene:
TACC1
Ensembl Gene ID:
ENSAPLG00000014634
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015259
4337862 - 4354846
16985
ENSAPLT00000041014
4337862 - 4354846
16985
ENSAPLT00000032069
4337862 - 4354846
16985