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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4352855_4353245_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4352855 - 4353245
Intron Length:
391

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAAACC
5'SS Class:
strong_major
3'SS Sequence:
CCCTCCATCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
TGCCTCTGACCT
Flanking Amino Acid:
EESRQEVLEMRKIVAEYEKT
Intron Amino Acid Position:
190

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
74.9
33.2
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
66.3
0.37
0.8
57.9
31.7
Minor 5ss
34.1
-1.8
3
44.4
43.1
Minor BPS
48.9
-0
1.8
66.64
43.8

Associated Gene:

Gene:
TACC1
Ensembl Gene ID:
ENSAPLG00000014634
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015259
4337862 - 4354846
16985
ENSAPLT00000041014
4337862 - 4354846
16985
ENSAPLT00000032069
4337862 - 4354846
16985