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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4353290_4353389_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4353290 - 4353389
Intron Length:
100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGGCCC
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCCCAT
U12 Branch Point Sequence:
TTCTCCTTCACA
Flanking Amino Acid:
EYEKTIAQMIEDEQRTNMTS
Intron Amino Acid Position:
205

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
0.9
66.5
39.1
Major BPS
59.7
0.24
1.3
68.6
38.9
Major PPT
84.3
0.77
0.7
79.4
26.1
Minor 5ss
26.6
-2.7
3.1
33.5
41.9
Minor BPS
74.9
0.78
1.7
83.03
38.2

Associated Gene:

Gene:
TACC1
Ensembl Gene ID:
ENSAPLG00000014634
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041014
4337862 - 4354846
16985
ENSAPLT00000032069
4337862 - 4354846
16985
ENSAPLT00000015259
4337862 - 4354846
16985