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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4353551_4354048_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4353551 - 4354048
Intron Length:
498

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCCTTGTC
5'SS Class:
major
3'SS Sequence:
CTCTATTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTCTAT
U12 Branch Point Sequence:
TGTTCTCTATTT
Flanking Amino Acid:
LKGVLEGFKKNEEALKKCAQ
Intron Amino Acid Position:
259

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62
0.28
1.4
63.7
42.2
Major BPS
61.2
0.28
1.4
60.7
45.4
Major PPT
84.3
0.77
0.8
76.2
37.5
Minor 5ss
31.7
-2.1
3.3
44.5
43.2
Minor BPS
54.7
0.23
1.9
77.23
39.6

Associated Gene:

Gene:
TACC1
Ensembl Gene ID:
ENSAPLG00000014634
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041014
4337862 - 4354846
16985
ENSAPLT00000032069
4337862 - 4354846
16985
ENSAPLT00000015259
4337862 - 4354846
16985