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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4354156_4354465_F

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
4354156 - 4354465
Intron Length:
310

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGAGCC
5'SS Class:
major
3'SS Sequence:
CAAACCCCCCCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCCAAAC
U12 Branch Point Sequence:
TTCTCTCCAAAC
Flanking Amino Acid:
LKVHAEEKLDKANEEIAQVR
Intron Amino Acid Position:
294

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
69.7
33.2
Major BPS
54.8
0.12
1.1
61.2
32.7
Major PPT
58.7
0.2
0.9
47.4
36
Minor 5ss
33.4
-1.9
3.4
43.5
37.7
Minor BPS
48.4
-0.1
1.9
64.59
40.8

Associated Gene:

Gene:
TACC1
Ensembl Gene ID:
ENSAPLG00000014634
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041014
4337862 - 4354846
16985
ENSAPLT00000032069
4337862 - 4354846
16985
ENSAPLT00000015259
4337862 - 4354846
16985