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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4371696_4372735_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4371696 - 4372735
Intron Length:
1040

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCATGAT
U12 Branch Point Sequence:
GTCTCTTCTACT
Flanking Amino Acid:
KEYTIHLEKNKELLPKDFTV
Intron Amino Acid Position:
80

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
79
35.3
Major BPS
72.1
0.55
1.1
62
44.2
Major PPT
89.7
0.89
0.6
84.8
22.9
Minor 5ss
36.1
-1.6
3.3
49.5
41.2
Minor BPS
53.5
0.19
1.9
72.98
43.8

Associated Gene:

Gene:
ADAM9
Ensembl Gene ID:
ENSAPLG00000005808
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006181
4369112 - 4383512
14401