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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4374426_4375176_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4374426 - 4375176
Intron Length:
751

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCAGAA
5'SS Class:
major
3'SS Sequence:
CACCATATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ACTTCTTGAACA
Flanking Amino Acid:
VVAVSTCSGLRGLVTIENTT
Intron Amino Acid Position:
132

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.9
0.42
1.2
62.2
38.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
66.3
0.37
0.9
62.4
37.8
Minor 5ss
33.9
-1.8
3.6
46.4
48.9
Minor BPS
69.5
0.61
1.4
74.52
37

Associated Gene:

Gene:
ADAM9
Ensembl Gene ID:
ENSAPLG00000005808
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006181
4369112 - 4383512
14401