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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_437599_438392_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
437599 - 438392
Intron Length:
794

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGAATG
5'SS Class:
major
3'SS Sequence:
CTTCTGTCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTGAG
U12 Branch Point Sequence:
CTGTGCGGAGCT
Flanking Amino Acid:
SHPQRSDKNNEFIVIHNGII
Intron Amino Acid Position:
148

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.59
1
68.2
42.8
Major BPS
47.4
-0.1
1.5
42.8
41.8
Major PPT
81.5
0.71
0.8
72.9
37.4
Minor 5ss
35.8
-1.6
3.3
45.5
43.8
Minor BPS
39.6
-0.7
2.5
60.2
49

Associated Gene:

Gene:
GFPT1
Ensembl Gene ID:
ENSAPLG00000000806
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018524
426624 - 457293
30670
ENSAPLT00000001166
432527 - 457207
24681
ENSAPLT00000043804
426624 - 468100
41477
ENSAPLT00000036978
426624 - 457293
30670