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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4376042_4376498_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4376042 - 4376498
Intron Length:
457

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGATT
5'SS Class:
strong_major
3'SS Sequence:
ATTTATCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
GTTTATTTATCT
Flanking Amino Acid:
ELFIVVDKEKFEDFGKSETE
Intron Amino Acid Position:
218

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
1
82.5
37
Major BPS
100
1.24
0.5
100
0
Major PPT
84.2
0.77
0.8
78
35.4
Minor 5ss
36.8
-1.5
3.6
56.4
48
Minor BPS
62.5
0.47
1.8
81.72
39.6

Associated Gene:

Gene:
ADAM9
Ensembl Gene ID:
ENSAPLG00000005808
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006181
4369112 - 4383512
14401