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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4376571_4377194_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4376571 - 4377194
Intron Length:
624

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGTTAA
5'SS Class:
major
3'SS Sequence:
TTTTCTTCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATTCTTATTT
Flanking Amino Acid:
MVQLANFLDSMYVMLNIRIV
Intron Amino Acid Position:
242

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.1
73.2
34
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
87.5
0.84
0.7
81.1
30.9
Minor 5ss
41.5
-0.9
2.8
49.9
46.4
Minor BPS
70
0.7
1.5
84.24
36.8

Associated Gene:

Gene:
ADAM9
Ensembl Gene ID:
ENSAPLG00000005808
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006181
4369112 - 4383512
14401