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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4378651_4379146_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4378651 - 4379146
Intron Length:
496

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGATAT
5'SS Class:
strong_major
3'SS Sequence:
TGCTCTTGTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAA
U12 Branch Point Sequence:
CGTCCACTAACT
Flanking Amino Acid:
SKSHAGGINVFGKISIQMFA
Intron Amino Acid Position:
326

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
0.9
75.6
29.3
Major BPS
69.8
0.49
1
70.3
31.8
Major PPT
77
0.61
0.9
72.4
37.7
Minor 5ss
34.3
-1.8
3.2
44.1
44.7
Minor BPS
50.6
0.1
2
72.75
43.2

Associated Gene:

Gene:
ADAM9
Ensembl Gene ID:
ENSAPLG00000005808
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006181
4369112 - 4383512
14401