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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4379281_4379438_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4379281 - 4379438
Intron Length:
158

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATC|GTAAGTAAC
5'SS Class:
major
3'SS Sequence:
GTTCTCTGTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
GTTCTCTGTACA
Flanking Amino Acid:
ASSCIMSSGASGSRNFSSCS
Intron Amino Acid Position:
370

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1.3
74.1
36.5
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
77.9
0.63
0.9
72.3
37.9
Minor 5ss
37.5
-1.4
2.7
46.4
36.1
Minor BPS
50.6
0.01
1.8
66.33
39.2

Associated Gene:

Gene:
ADAM9
Ensembl Gene ID:
ENSAPLG00000005808
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006181
4369112 - 4383512
14401